AlzGene - Polymorphism Details
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 Study: Nakayama, 2002
 Gene: CAST  (BS-17; MGC9402)  Entrez Gene    View on PDGene
 Protein: calpastatin   ProteinLink
 Chromosome: 5   (View: 1  2  3  4  5  6  7  8  9  10  11  12  13  14  15  16  17  18  19  20  21  22  X  Y  MT)
 Status: Updated 23 October 2005
Meta-Analysis     Gene Overview
Total number of polymorphisms investigated by this study: 9

Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Asian
rs9667 (-82A/G) Japan AD
CTR		 0.24
0.18		 0.76
0.82		 5 (0.050)
0 (0.000)		 38 (0.376)
33 (0.367)		 58 (0.574)
57 (0.633)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Asian
rs13183352 (IVS7-96A/G) Japan AD
CTR		 0.09
0.09		 0.91
0.91		 1 (0.010)
2 (0.022)		 16 (0.158)
12 (0.133)		 84 (0.832)
76 (0.844)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   A-Allele G-Allele A/A
(frequency)		 A/G
(frequency)		 G/G
(frequency)
 Asian
rs7724759 (669A/G) Japan AD
CTR		 0.09
0.08		 0.91
0.92		 0 (0.000)
1 (0.011)		 18 (0.178)
13 (0.144)		 83 (0.822)
76 (0.844)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele G-Allele C/C
(frequency)		 C/G
(frequency)		 G/G
(frequency)
 Asian
rs754615 (Ser408Cys) Japan AD
CTR		 0.10
0.10		 0.90
0.90		 2 (0.020)
1 (0.011)		 17 (0.168)
16 (0.180)		 82 (0.812)
72 (0.809)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   T-Allele C-Allele T/T
(frequency)		 T/C
(frequency)		 C/C
(frequency)
 Asian
rs2290677 (IVS20-10C/T) Japan AD
CTR		 0.09
0.03		 0.91
0.97		 1 (0.010)
0 (0.000)		 16 (0.158)
6 (0.067)		 84 (0.832)
84 (0.933)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Asian
rs27654 (IVS21-65G/A) Japan AD
CTR		 0.34
0.39		 0.66
0.61		 14 (0.139)
17 (0.189)		 40 (0.396)
36 (0.400)		 47 (0.465)
37 (0.411)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   C-Allele T-Allele C/C
(frequency)		 C/T
(frequency)		 T/T
(frequency)
 Asian
IVS22+31T/C Japan AD
CTR		 0.08
0.03		 0.92
0.97		 1 (0.010)
0 (0.000)		 15 (0.149)
6 (0.067)		 85 (0.842)
84 (0.933)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   del-Allele ins-Allele del/del
(frequency)		 del/ins
(frequency)		 ins/ins
(frequency)
 Asian
IVS24+38ins/del Japan AD
CTR		 0.20
0.28		 0.80
0.72		 3 (0.030)
6 (0.067)		 35 (0.347)
38 (0.422)		 63 (0.624)
46 (0.511)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)		 Population   G-Allele A-Allele G/G
(frequency)		 G/A
(frequency)		 A/A
(frequency)
 Asian
rs3214019 (IVS25-32A/G) Japan AD
CTR		 0.08
0.03		 0.92
0.97		 1 (0.010)
0 (0.000)		 14 (0.139)
6 (0.067)		 86 (0.851)
83 (0.933)
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Genes: 695
Polymorphisms: 2973
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