AlzGene - Polymorphism Details
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 Study: Laws, 2009
 Gene: LIPC  (HL; HTGL; LIPH)  Entrez Gene    View on ALSGene
 Protein: lipase C   ProteinLink
 Chromosome: 15   (View: 1  2  3  4  5  6  7  8  9  10  11  12  13  14  15  16  17  18  19  20  21  22  X  Y  MT)
 Status: Updated 18 April 2011
Meta-Analysis     Gene Overview
Total number of polymorphisms investigated by this study: 25

Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   T-Allele G-Allele T/T
(frequency)
T/G
(frequency)
G/G
(frequency)
 Caucasian
rs6074 Germany AD
CTR
0.13
0.12
0.87
0.88
11 (0.025)
6 (0.021)
88 (0.201)
57 (0.197)
339 (0.774)
227 (0.783)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   C-Allele A-Allele C/C
(frequency)
C/A
(frequency)
A/A
(frequency)
 Caucasian
rs4774297 Germany AD
CTR
0.46
0.47
0.54
0.53
103 (0.235)
67 (0.231)
201 (0.459)
137 (0.472)
134 (0.306)
86 (0.297)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   T-Allele C-Allele T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
 Caucasian
rs1800588 Germany AD
CTR
0.23
0.19
0.77
0.81
25 (0.057)
15 (0.052)
148 (0.338)
83 (0.286)
265 (0.605)
192 (0.662)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   T-Allele C-Allele T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
 Caucasian
rs17190517 Germany AD
CTR
0.44
0.46
0.56
0.54
94 (0.215)
73 (0.253)
201 (0.459)
119 (0.412)
143 (0.326)
97 (0.336)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Caucasian
rs261341 Germany AD
CTR
0.29
0.28
0.71
0.72
41 (0.094)
28 (0.097)
174 (0.397)
106 (0.367)
223 (0.509)
155 (0.536)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   C-Allele G-Allele C/C
(frequency)
C/G
(frequency)
G/G
(frequency)
 Caucasian
rs483140 Germany AD
CTR
0.26
0.31
0.74
0.69
26 (0.059)
21 (0.072)
179 (0.409)
136 (0.469)
233 (0.532)
133 (0.459)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   C-Allele T-Allele C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
 Caucasian
rs261336 Germany AD
CTR
0.18
0.15
0.82
0.85
11 (0.025)
8 (0.028)
136 (0.311)
68 (0.235)
291 (0.664)
213 (0.737)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele A-Allele G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
 Caucasian
rs3825776 Germany AD
CTR
0.32
0.33
0.68
0.67
48 (0.110)
29 (0.100)
188 (0.429)
134 (0.462)
202 (0.461)
127 (0.438)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   A-Allele T-Allele A/A
(frequency)
A/T
(frequency)
T/T
(frequency)
 Caucasian
rs10518976 Germany AD
CTR
0.09
0.09
0.91
0.91
2 (0.005)
2 (0.007)
71 (0.162)
48 (0.166)
365 (0.833)
240 (0.828)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   T-Allele C-Allele T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
 Caucasian
rs10518978 Germany AD
CTR
0.12
0.10
0.88
0.90
12 (0.027)
7 (0.024)
78 (0.178)
45 (0.155)
348 (0.795)
238 (0.821)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele C-Allele G/G
(frequency)
G/C
(frequency)
C/C
(frequency)
 Caucasian
rs6494011 Germany AD
CTR
0.15
0.16
0.85
0.84
10 (0.023)
4 (0.014)
114 (0.260)
82 (0.283)
314 (0.717)
204 (0.703)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   C-Allele G-Allele C/C
(frequency)
C/G
(frequency)
G/G
(frequency)
 Caucasian
rs1968685 Germany AD
CTR
0.42
0.44
0.58
0.56
83 (0.189)
66 (0.228)
203 (0.463)
124 (0.428)
152 (0.347)
100 (0.345)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   C-Allele G-Allele C/C
(frequency)
C/G
(frequency)
G/G
(frequency)
 Caucasian
rs1869137 Germany AD
CTR
0.43
0.42
0.57
0.58
71 (0.162)
50 (0.172)
233 (0.533)
141 (0.486)
133 (0.304)
99 (0.341)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele A-Allele G/G
(frequency)
G/A
(frequency)
A/A
(frequency)
 Caucasian
rs1973028 Germany AD
CTR
0.35
0.37
0.65
0.63
56 (0.128)
41 (0.142)
195 (0.445)
134 (0.464)
187 (0.427)
114 (0.394)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele C-Allele G/G
(frequency)
G/C
(frequency)
C/C
(frequency)
 Caucasian
rs2899631 Germany AD
CTR
0.21
0.17
0.79
0.83
29 (0.066)
9 (0.031)
122 (0.279)
79 (0.272)
286 (0.654)
202 (0.697)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   C-Allele T-Allele C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
 Caucasian
rs4774302 Germany AD
CTR
0.37
0.37
0.63
0.63
63 (0.144)
35 (0.121)
202 (0.461)
146 (0.503)
173 (0.395)
109 (0.376)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Caucasian
rs2899632 Germany AD
CTR
0.20
0.18
0.80
0.82
16 (0.037)
10 (0.034)
140 (0.320)
83 (0.286)
282 (0.644)
197 (0.679)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   C-Allele G-Allele C/C
(frequency)
C/G
(frequency)
G/G
(frequency)
 Caucasian
rs12899928 Germany AD
CTR
0.02
0.02
0.98
0.98
1 (0.002)
0 (0.000)
15 (0.034)
13 (0.045)
422 (0.963)
277 (0.955)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   T-Allele C-Allele T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
 Caucasian
rs4775072 Germany AD
CTR
0.02
0.02
0.98
0.98
1 (0.002)
0 (0.000)
14 (0.032)
12 (0.041)
423 (0.966)
278 (0.959)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Caucasian
rs6078 (V95M) Germany AD
CTR
0.04
0.03
0.96
0.97
1 (0.002)
0 (0.000)
32 (0.073)
18 (0.062)
406 (0.925)
272 (0.938)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   T-Allele G-Allele T/T
(frequency)
T/G
(frequency)
G/G
(frequency)
 Caucasian
rs2242064 Germany AD
CTR
0.31
0.32
0.69
0.68
46 (0.105)
26 (0.090)
183 (0.419)
135 (0.466)
208 (0.476)
129 (0.445)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Caucasian
rs871804 Germany AD
CTR
0.13
0.12
0.87
0.88
10 (0.023)
5 (0.017)
91 (0.208)
58 (0.200)
337 (0.769)
227 (0.783)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Caucasian
rs2414594 Germany AD
CTR
0.01
0.02
0.99
0.98
0 (0.000)
0 (0.000)
8 (0.018)
10 (0.034)
430 (0.982)
280 (0.966)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele T-Allele G/G
(frequency)
G/T
(frequency)
T/T
(frequency)
 Caucasian
rs3829462 (F356L) Germany AD
CTR
0.01
0.02
0.99
0.98
1 (0.002)
0 (0.000)
8 (0.018)
9 (0.031)
429 (0.979)
281 (0.969)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   C-Allele T-Allele C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
 Caucasian
rs4774308 Germany AD
CTR
0.37
0.35
0.63
0.65
60 (0.137)
37 (0.127)
203 (0.465)
132 (0.454)
174 (0.398)
122 (0.419)
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Studies: 1395
Genes: 695
Polymorphisms: 2973
Meta-analyses: 320
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