AlzGene

AlzGene - Polymorphism Details

Study:

Takei, 2009

Gene:

TOMM40 (TOM40; PEREC1; C19orf1; PER-EC1; D19S1177E)

View on MSGene

Protein:

translocase of outer mitochondrial membrane 40 homolog (yeast)

Chromosome:

19 (View: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 X Y MT)

Status:

Updated 18 April 2011

Total number of polymorphisms investigated by this study: 28

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		C-Allele	T-Allele	C/C (frequency)	C/T (frequency)	T/T (frequency)
Asian
rs157581	Japan	AD CTR	0.40 0.27	0.60 0.73	90 (0.168) 47 (0.068)	251 (0.469) 281 (0.407)	194 (0.363) 363 (0.525)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		G-Allele	A-Allele	G/G (frequency)	G/A (frequency)	A/A (frequency)
Asian
rs157580	Japan	AD CTR	0.40 0.52	0.60 0.48	85 (0.158) 187 (0.267)	262 (0.486) 351 (0.501)	192 (0.356) 162 (0.231)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		G-Allele	A-Allele	G/G (frequency)	G/A (frequency)	A/A (frequency)
Asian
rs2075650	Japan	AD CTR	- -	- -	0 (-) 0 (-)	0 (-) 0 (-)	0 (-) 0 (-)

(-) : Either no data provided, or data otherwise not eligible for inclusion (see methods for details).

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		A-Allele	G-Allele	A/A (frequency)	A/G (frequency)	G/G (frequency)
Asian
rs10119	Japan	AD CTR	0.33 0.15	0.67 0.85	66 (0.122) 13 (0.018)	225 (0.417) 189 (0.266)	249 (0.461) 509 (0.716)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		C-Allele	T-Allele	C/C (frequency)	C/T (frequency)	T/T (frequency)
Asian
rs157584	Japan	AD CTR	- -	- -	0 (-) 0 (-)	0 (-) 0 (-)	0 (-) 0 (-)

(-) : Either no data provided, or data otherwise not eligible for inclusion (see methods for details).

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		C-Allele	A-Allele	C/C (frequency)	C/A (frequency)	A/A (frequency)
Asian
rs157590	Japan	AD CTR	- -	- -	0 (-) 0 (-)	0 (-) 0 (-)	0 (-) 0 (-)

(-) : Either no data provided, or data otherwise not eligible for inclusion (see methods for details).

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		C-Allele	T-Allele	C/C (frequency)	C/T (frequency)	T/T (frequency)
Asian
rs741780	Japan	AD CTR	0.23 0.30	0.77 0.70	26 (0.049) 57 (0.081)	193 (0.362) 306 (0.435)	314 (0.589) 340 (0.484)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		C-Allele	T-Allele	C/C (frequency)	C/T (frequency)	T/T (frequency)
Asian
rs1038025	Japan	AD CTR	- -	- -	0 (-) 0 (-)	0 (-) 0 (-)	0 (-) 0 (-)

(-) : Either no data provided, or data otherwise not eligible for inclusion (see methods for details).

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		G-Allele	A-Allele	G/G (frequency)	G/A (frequency)	A/A (frequency)
Asian
rs1038026	Japan	AD CTR	- -	- -	0 (-) 0 (-)	0 (-) 0 (-)	0 (-) 0 (-)

(-) : Either no data provided, or data otherwise not eligible for inclusion (see methods for details).

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		T-Allele	C-Allele	T/T (frequency)	T/C (frequency)	C/C (frequency)
Asian
rs1160985	Japan	AD CTR	0.23 0.29	0.77 0.71	28 (0.052) 57 (0.081)	192 (0.354) 300 (0.427)	323 (0.595) 346 (0.492)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		C-Allele	G-Allele	C/C (frequency)	C/G (frequency)	G/G (frequency)
Asian
rs1305062	Japan	AD CTR	- -	- -	0 (-) 0 (-)	0 (-) 0 (-)	0 (-) 0 (-)

(-) : Either no data provided, or data otherwise not eligible for inclusion (see methods for details).

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		A-Allele	G-Allele	A/A (frequency)	A/G (frequency)	G/G (frequency)
Asian
rs7259620	Japan	AD CTR	0.23 0.29	0.77 0.71	27 (0.050) 56 (0.079)	189 (0.353) 301 (0.426)	319 (0.596) 349 (0.494)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		G-Allele	A-Allele	G/G (frequency)	G/A (frequency)	A/A (frequency)
Asian
rs760136	Japan	AD CTR	0.23 0.30	0.77 0.70	27 (0.050) 57 (0.083)	191 (0.353) 294 (0.427)	323 (0.597) 338 (0.491)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		C-Allele	T-Allele	C/C (frequency)	C/T (frequency)	T/T (frequency)
Asian
19AyD0326	Japan	AD CTR	0.27 0.14	0.73 0.86	40 (0.074) 9 (0.013)	212 (0.390) 176 (0.248)	292 (0.537) 524 (0.739)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		A-Allele	G-Allele	A/A (frequency)	A/G (frequency)	G/G (frequency)
Asian
rs1160983	Japan	AD CTR	0.03 0.06	0.97 0.94	0 (0.000) 3 (0.004)	30 (0.055) 82 (0.117)	511 (0.945) 616 (0.879)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		T-Allele	C-Allele	T/T (frequency)	T/C (frequency)	C/C (frequency)
Asian
rs157582	Japan	AD CTR	0.38 0.23	0.62 0.77	80 (0.150) 36 (0.051)	240 (0.451) 250 (0.356)	212 (0.398) 417 (0.593)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		T-Allele	G-Allele	T/T (frequency)	T/G (frequency)	G/G (frequency)
Asian
rs157583	Japan	AD CTR	0.07 0.02	0.93 0.98	7 (0.013) 0 (0.000)	57 (0.108) 34 (0.049)	465 (0.879) 659 (0.951)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		C-Allele	A-Allele	C/C (frequency)	C/A (frequency)	A/A (frequency)
Asian
rs157585	Japan	AD CTR	- -	- -	0 (-) 0 (-)	0 (-) 0 (-)	0 (-) 0 (-)

(-) : Either no data provided, or data otherwise not eligible for inclusion (see methods for details).

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		G-Allele	A-Allele	G/G (frequency)	G/A (frequency)	A/A (frequency)
Asian
rs157587	Japan	AD CTR	0.07 0.03	0.93 0.97	6 (0.011) 0 (0.000)	58 (0.109) 36 (0.051)	467 (0.879) 668 (0.949)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		T-Allele	C-Allele	T/T (frequency)	T/C (frequency)	C/C (frequency)
Asian
rs157588	Japan	AD CTR	- -	- -	0 (-) 0 (-)	0 (-) 0 (-)	0 (-) 0 (-)

(-) : Either no data provided, or data otherwise not eligible for inclusion (see methods for details).

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		G-Allele	A-Allele	G/G (frequency)	G/A (frequency)	A/A (frequency)
Asian
rs2075649	Japan	AD CTR	- -	- -	0 (-) 0 (-)	0 (-) 0 (-)	0 (-) 0 (-)

(-) : Either no data provided, or data otherwise not eligible for inclusion (see methods for details).

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		G-Allele	T-Allele	G/G (frequency)	G/T (frequency)	T/T (frequency)
Asian
rs283817	Japan	AD CTR	0.07 0.02	0.93 0.98	7 (0.013) 0 (0.000)	61 (0.114) 35 (0.049)	468 (0.873) 673 (0.951)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		T-Allele	G-Allele	T/T (frequency)	T/G (frequency)	G/G (frequency)
Asian
rs394819	Japan	AD CTR	0.07 0.02	0.93 0.98	7 (0.013) 0 (0.000)	58 (0.108) 35 (0.050)	473 (0.879) 672 (0.950)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		G-Allele	A-Allele	G/G (frequency)	G/A (frequency)	A/A (frequency)
Asian
rs405697	Japan	AD CTR	0.56 0.44	0.44 0.56	167 (0.309) 137 (0.195)	276 (0.510) 348 (0.496)	98 (0.181) 216 (0.308)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		G-Allele	C-Allele	G/G (frequency)	G/C (frequency)	C/C (frequency)
Asian
rs434132	Japan	AD CTR	0.07 0.02	0.93 0.98	7 (0.013) 0 (0.000)	59 (0.109) 34 (0.048)	474 (0.878) 675 (0.952)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		T-Allele	G-Allele	T/T (frequency)	T/G (frequency)	G/G (frequency)
Asian
rs446037	Japan	AD CTR	0.07 0.03	0.93 0.97	7 (0.013) 1 (0.001)	60 (0.112) 34 (0.048)	468 (0.875) 674 (0.951)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		T-Allele	C-Allele	T/T (frequency)	T/C (frequency)	C/C (frequency)
Asian
rs573199	Japan	AD CTR	0.06 0.02	0.94 0.98	7 (0.013) 0 (0.000)	52 (0.098) 28 (0.040)	472 (0.889) 675 (0.960)

Case-Control Studies (by ethnic group)
					Genotypes
Polymorphism ID# (Link to NCBI)	Population		T-Allele	C-Allele	T/T (frequency)	T/C (frequency)	C/C (frequency)
Asian
rs7256173	Japan	AD CTR	- -	- -	0 (-) 0 (-)	0 (-) 0 (-)	0 (-) 0 (-)

(-) : Either no data provided, or data otherwise not eligible for inclusion (see methods for details).

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