AlzGene - Polymorphism Details
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 Study: Szymanski, 2008
 Gene: POMT2  (FLJ22309; DKFZp686G10254)  Entrez Gene
 Protein: protein-O-mannosyltransferase 2   ProteinLink
 Chromosome: 14   (View: 1  2  3  4  5  6  7  8  9  10  11  12  13  14  15  16  17  18  19  20  21  22  X  Y  MT)
 Status: Updated 18 April 2011
Meta-Analysis     Gene Overview
Total number of polymorphisms investigated by this study: 11

Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele T-Allele G/G
(frequency)
G/T
(frequency)
T/T
(frequency)
 Caucasian
rs11627257 USA (NIMH, NCRAD) AD
CTR
0.30
0.28
0.70
0.72
39 (0.111)
26 (0.090)
136 (0.387)
112 (0.388)
176 (0.501)
151 (0.522)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele C-Allele G/G
(frequency)
G/C
(frequency)
C/C
(frequency)
 Caucasian
rs12433986 USA (NIMH, NCRAD) AD
CTR
0.04
0.05
0.96
0.95
0 (0.000)
0 (0.000)
26 (0.076)
26 (0.092)
314 (0.924)
256 (0.908)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Caucasian
rs17105685 USA (NIMH, NCRAD) AD
CTR
0.18
0.18
0.82
0.82
11 (0.032)
7 (0.025)
101 (0.297)
89 (0.316)
228 (0.671)
186 (0.660)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   C-Allele T-Allele C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
 Caucasian
rs2058916 USA (NIMH, NCRAD) AD
CTR
0.06
0.08
0.94
0.92
0 (0.000)
0 (0.000)
43 (0.123)
47 (0.163)
308 (0.877)
242 (0.837)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   C-Allele T-Allele C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
 Caucasian
rs2098380 USA (NIMH, NCRAD) AD
CTR
0.39
0.39
0.61
0.61
54 (0.158)
38 (0.134)
157 (0.459)
142 (0.502)
131 (0.383)
103 (0.364)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   A-Allele G-Allele A/A
(frequency)
A/G
(frequency)
G/G
(frequency)
 Caucasian
rs3783986 USA (NIMH, NCRAD) AD
CTR
0.41
0.38
0.59
0.62
60 (0.171)
34 (0.118)
165 (0.470)
150 (0.519)
126 (0.359)
105 (0.363)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   T-Allele C-Allele T/T
(frequency)
T/C
(frequency)
C/C
(frequency)
 Caucasian
rs438931 USA (NIMH, NCRAD) AD
CTR
0.16
0.12
0.84
0.88
8 (0.023)
1 (0.003)
93 (0.266)
70 (0.242)
249 (0.711)
218 (0.754)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   C-Allele T-Allele C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
 Caucasian
rs4540995 USA (NIMH, NCRAD) AD
CTR
0.10
0.13
0.90
0.87
2 (0.006)
2 (0.007)
66 (0.190)
70 (0.244)
279 (0.804)
215 (0.749)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   A-Allele T-Allele A/A
(frequency)
A/T
(frequency)
T/T
(frequency)
 Caucasian
rs4899650 USA (NIMH, NCRAD) AD
CTR
0.38
0.39
0.62
0.61
55 (0.157)
38 (0.131)
155 (0.442)
147 (0.509)
141 (0.402)
104 (0.360)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   C-Allele T-Allele C/C
(frequency)
C/T
(frequency)
T/T
(frequency)
 Caucasian
rs7159558 USA (NIMH, NCRAD) AD
CTR
0.45
0.44
0.55
0.56
76 (0.222)
60 (0.214)
155 (0.453)
129 (0.459)
111 (0.325)
92 (0.327)


Case-Control Studies (by ethnic group)
  Genotypes
Polymorphism ID#
(Link to NCBI)
Population   G-Allele T-Allele G/G
(frequency)
G/T
(frequency)
T/T
(frequency)
 Caucasian
rs8015231 USA (NIMH, NCRAD) AD
CTR
0.11
0.10
0.89
0.90
5 (0.014)
5 (0.017)
68 (0.195)
50 (0.174)
276 (0.791)
232 (0.808)
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